Chapter 15 Evolution Test Answers


  • When lions prey on a herd of antelope, some antelope are killed and some escape. The number and location of bones of many fossil vertebrates are similar to those in living vertebrates. Most biologists would probably explain this fact on the basis of...
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  • Evolution in Malaysia. On the Origin of Species. Darwin was prompted to publish his theory of evolution by a. When a farmer breeds only his or her best livestock, the process involved is a. An adaptation is an inherited characteristic that can be a....
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  • Change over time; process by which modern organisms have descended from ancient organisms. Artificial Selection. Struggle for existence. How suitable an organism is to survive. Survival of the fittest. A theory developed by Darwin, that states organisms more fit for their specific environment adaptations survive and reproduce more successfully than those without. Natural Selection. Descent with modification. Common descent. Chapter 15 Intro to Evolution Test The principle that states that all species- living and nonliving- were derived from a common ancestor. Request an Exam Copy of Evolution. If there were no copies, then in the second generation, there would still be none.
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  • Continuing in this way, we get the probability distribution over time; however, successive generations take more and more calculation. See Table P However, this is an average over a very broad distribution. This derivation is explained in Chapter Now, there is probability 0. The expected number of copies is 0. See Fig. The probability of loss is the same, whether we have reproduction in discrete generations or in continuous time. The overall expectation, exp 0. The exact formula for the variance at time t is given in Box At large times, populations fix for either Q or Pultimately with probability 0. The form of the distribution is shown in Figure We need to find the expected proportion of heterozygotes formed by random mating within a population with allele frequency pE[2 pq ].
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  • This is derived in Box In this sense, the overall genetic diversity stays constant but shifts from variation within populations to variation between them. So, from the equation in Chapter 28 :. The last constraint is then. After t generations it will equal. In the indefinite future, the variance of the trait mean tends to a maximum of 2 V A 0 ; its s. Roughly equal amounts of drift occur during the brief bottlenecks as during the longer periods of larger size. First, consider the chance that a randomly chosen gene in the daughter is IBD with a random gene in the queen. Now, consider the chance that two genes, one from each daughter, are IBD. If the queen mates with many different males, then if two genes in the daughters both came from the father, they will have come from different fathers and will be unrelated. There are two loops, one via the grandfather and one via the grandmother, and each contain six individuals. The incidence of the disease is now 0. We need to work out the average IBD between the two genes in a randomly chosen individual.
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  • If that individual does not come from an inbred marriage, then they will not be IBD. But, the average probability of identity in the ancestor, f Amust equal the current identity if the population is at steady state. The correction for inbreeding in the ancestor has made hardly any difference. In total. This is somewhat higher, because this calculation has allowed for random variation in the coalescence times.
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  • The expected time to coalescence of a randomly chosen pair is 2 N e generations, and so they have had on average 4 N e generations to diverge. If we assume that every mutation is at a new site i. The corresponding length of genealogy is nT n. If we add up over the times for which nn — 1, This reflects the fact that with a star genealogy, each mutation appears only once and so contributes minimally to pairwise diversity. The expectations become more different for larger samples. Table PWhat do you know about the theory? Changes in inherited characteristics of a population that help increase the fitness of a species. Earth is millions years old and the processes that changed earth in the past are still operating.
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  • From Box The mean offspring number is so that the population is in steady state. The variance of offspring number, V, is three times the variance of a Poisson distribution with the same mean. Now, consider the chance that two genes, one from each daughter, are IBD. See Fig. Thus, See Fig. The incidence of the disease is now 0. If that individual does not come from an inbred marriage, then they will not be IBD. But, the average probability of identity in the ancestor, fA, must equal the current identity if the population is at steady state. The correction for inbreeding in the ancestor has made hardly any difference. This is somewhat higher, because this calculation has allowed for random variation in the coalescence times.
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  • Answer The corresponding length of genealogy is nTn. If we add up over the times for which n, n — 1, This reflects the fact that with a star genealogy, each mutation appears only once and so contributes minimally to pairwise diversity. The expectations become more different for larger samples. Summing 2pq across all the sites and then dividing by the length of sequence gives 0.
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  • In fact, this haplotype has frequency 0. Therefore, D is the difference between observed and expected frequencies and equals 0. The easiest way to see this is to look at rows 3 and 6 in the reduced table bold , which show all four combinations 00, 01, 10, These groups overlap, which is impossible unless there has been recombination. In general, seeing a pair of sites that show all four possible combinations i. We could have seen this from iii , where the first and last rows were shown to be in less than maximal LD, i. Recall that 1 cM corresponds to a recombination rate of 0.
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  • More precisely, the map distance will be exponentially distributed with mean 0. If it coalesces with the original branch, the common ancestor will be the same, but if it coalesces with the other branch, the common ancestor will be more recent. Suppose that there is a chance x that they are together. Mutation and quantitative variation. Lynch M. Phenotypic evolution by neutral mutation. Evolution — All rights reserved. The reproduction, modification, storage in a retrieval system, or retransmission, in any form or by any means, electronic, mechanical, or otherwise, for reasons other than personal, noncommercial use is strictly prohibited without prior written permission. You are authorized to download one copy of the material on this Web site for personal, noncommercial use only. The material made available on this Web site is protected by United States copyright laws and is provided solely for the use of instructors in teaching their courses and assessing student learning.
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  • Correlating cross-species phenotypes. Phenotypes of wild-type top and PAX6 ortholog mutations bottom in human, mouse, zebrafish, and fly can be described with the EQ method suggested by Washington et al [59]. Once phenotypic descriptions are standardized across species, genotypic variations can be assessed as well. Genes that are part of the same functional module are generally co-expressed. Also, there is evidence for co-expression of visibly functionally unrelated genes [37] , [62] , [63]. The explanation of these co-expression clusters having an evolutionary advantage only holds true for otherwise unjustified conservation of these clusters throughout different species; i.
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  • Using this assumption, Ala et al [61] had narrowed down the initial list of 1, genes in the loci mapped via genetic linkage to OMIM Online Mendelian Inheritance in Man [64] phenotypes to twenty times fewer 81 possible disease-causing genes. For example, in their analysis a cluster of functionally unrelated genes co-expressed in human and mouse contained a bona fide disease-gene KCNIP4 partial epilepsy with pericentral spikes. Tissue specificity is also important for choosing correct protein-protein interaction networks, as some proteins interact in some tissues, but rarely in others [66]. Disease-associated cellular pathways e. For example, autosomal recessive generalized myotonia Becker's disease GM and autosomal dominant myotoniacongenita Thomsen's disease, MC are characterized by skeletal muscle stiffness [67].
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  • This phenotype is the result of muscle membrane hyperexcitability and, in conjunction with observed alterations in muscle chloride and sodium currents, points to possible involvement of deficiencies of the muscle chloride channel. In fact, studies point to the mutations in the transmembrane region of CLC-1, the muscle chloride channel coding gene, as the culprit [67]. Another example is that of the multiple storage diseases, such as Tay-Sachs, Gaucher, Niemann-Pick and Pompe disease, which are caused by the impairment of the degradation pathways of the intracellular vesicular transport.
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  • In nature strongly beneficial mutations are very rare; they spread rapidly in the population and cannot be considered disease-associated. On the other hand, strongly deleterious or inactivating mutations are often incompatible with life. A small percentage of mutations of this type, affecting genes whose function is not life-essential, are often associated with monogenic Mendelian disorders. Strongly deleterious mutations in the genes whose function may somehow be compensated e. Complex disorders may also accumulate weakly deleterious mutations to generate a strongly negative phenotype. Intuitively it is clear that a selected candidate gene, carrying a deleterious mutation in an affected individual is more likely to be disease-associated than one which contains functionally neutral mutants or no variation at all. Structural variation SV is the least studied of all types of mutations.
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  • However, because each of the structural variants is large kb-Mb scale , the total number of base pairs affected by SVs may actually be comparable to the number of base pairs affected by the much more common SNPs single nucleotide polymorphisms. Moreover, high throughput detection of structural variants is notoriously difficult and is only now becoming possible with better sequencing techniques and CNV arrays. Thus, more SVs may be discovered in the near future. We do not currently know what proportion of genetic disease is caused by SVs, but we suspect that it is high. Gross changes to genome sequence are very likely to be disease associated, but also frequently gene non-specific. For instance, Down's syndrome, trisomy 21, is an example of a whole extra chromosome gain and cri du chat syndrome results from the deletion of the short arm of chromosome 5 [73].
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